If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 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'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ), 'gf_id' => 'HOM05D000594', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000594' ), 'data_identifier' => 'HOM05D000594', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000594', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '943', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18440' => 'bna', 'A02p10130' => 'bna', 'A02p20170' => 'bna', 'A04p22580' => 'bna', 'A05p15720' => 'bna', 'A06p08110' => 'bna', 'A07p41230' => 'bna', 'A08p05410' => 'bna', 'A08p15830' => 'bna', 'A09p16200' => 'bna', 'A09p26860' => 'bna', 'A10p06160' => 'bna', 'Aa31LG1G3260' => 'aar', 'Aa31LG2G190' => 'aar', 'Aa31LG3G10560' => 'aar', 'Aa31LG4G5930' => 'aar', 'Aa31LG5G10220' => 'aar', 'Aa31LG5G6820' => 'aar', 'Aa31LG9G10160' => 'aar', 'Aa31LG9G14360' => 'aar', 'Aa31sc454G30' => 'aar', 'Aa31sc823G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1803' => 'aag', 'Actinidia02111' => 'ach', 'Actinidia02600' => 'ach', 'Actinidia05136' => 'ach', 'Actinidia05543' => 'ach', 'Actinidia09951' => 'ach', 'Actinidia12875' => 'ach', 'Actinidia23054' => 'ach', 'Actinidia26956' => 'ach', 'Actinidia26957' => 'ach', 'Actinidia28595' => 'ach', 'Actinidia28658' => 'ach', 'Actinidia37929' => 'ach', 'Ah.05g166740' => 'amhyb', 'Ah.06g181180' => 'amhyb', 'Ah.06g183140' => 'amhyb', 'Ah.08g220960' => 'amhyb', 'Ah.09g237120' => 'amhyb', 'AL1G22600' => 'aly', 'AL1G54300' => 'aly', 'AL2G13350' => 'aly', 'AL2G35690' => 'aly', 'AL4G24420' => 'aly', 'AL6G47330' => 'aly', 'AL7G25580' => 'aly', 'AL7G31030' => 'aly', 'AL8G30080' => 'aly', 'Aqoxy1G03826' => 'aox', 'Aqoxy3G03968' => 'aox', 'Aqoxy4G01921' => 'aox', 'Aqoxy4G02211' => 'aox', 'Aqoxy4G02320' => 'aox', 'Aqoxy4G02645' => 'aox', 'Aqoxy7G00736' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5FCQ1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60QMTC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654T2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8Q4IW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4LZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EV7AB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7RCEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIZ4NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXQM1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRM2UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3TBG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCG326' => 'arhy', 'AT1G11490' => 'ath', 'AT1G62520' => 'ath', 'AT1G75710' => 'ath', 'AT2G29660' => 'ath', 'AT4G12450' => 'ath', 'AT4G22560' => 'ath', 'AT4G27240' => 'ath', 'AT5G54630' => 'ath', 'ATR0109G015' => 'atr', 'ATR0481G010' => 'atr', 'ATR0584G025' => 'atr', 'ATR0618G117' => 'atr', 'ATR1149G075' => 'atr', 'ATR1153G104' => 'atr', 'Atru.chr10.2044' => 'acertr', 'Atru.chr13.1340' => 'acertr', 'Atru.chr13.1383' => 'acertr', 'Atru.chr13.304' => 'acertr', 'Atru.chr2.3145' => 'acertr', 'Atru.chr2.3615' => 'acertr', 'Atru.chr2.769' => 'acertr', 'Atru.chr9.1363' => 'acertr', 'AUR62001674' => 'cqu', 'AUR62004710' => 'cqu', 'AUR62007487' => 'cqu', 'AUR62017057' => 'cqu', 'AUR62020107' => 'cqu', 'AUR62023627' => 'cqu', 'AUR62029243' => 'cqu', 'AUR62033836' => 'cqu', 'AUR62034222' => 'cqu', 'AUR62035747' => 'cqu', 'AUR62039943' => 'cqu', 'AUR62040661' => 'cqu', 'BcaB01g01739' => 'bca', 'BcaB02g07038' => 'bca', 'BcaB02g10274' => 'bca', 'BcaB03g11734' => 'bca', 'BcaB04g17479' => 'bca', 'BcaB05g22151' => 'bca', 'BcaB05g24935' => 'bca', 'BcaB06g28322' => 'bca', 'BcaB07g31334' => 'bca', 'BcaB07g31335' => 'bca', 'BcaB07g33810' => 'bca', 'BcaC01g00785' => 'bca', 'BcaC02g08071' => 'bca', 'BcaC02g11051' => 'bca', 'BcaC03g14299' => 'bca', 'BcaC03g15616' => 'bca', 'BcaC04g20320' => 'bca', 'BcaC04g21235' => 'bca', 'BcaC04g22414' => 'bca', 'BcaC05g25025' => 'bca', 'BcaC07g37190' => 'bca', 'BcaC08g42979' => 'bca', 'BcaC08g47050' => 'bca', 'BcaC09g50595' => 'bca', 'BcaNung03051' => 'bca', 'BcaNung07114' => 'bca', 'BcaNung07115' => 'bca', 'BolC1t02279H' => 'bol', 'BolC2t07785H' => 'bol', 'BolC2t09329H' => 'bol', 'BolC3t20708H' => 'bol', 'BolC4t23639H' => 'bol', 'BolC4t27393H' => 'bol', 'BolC5t29710H' => 'bol', 'BolC6t35350H' => 'bol', 'BolC6t40004H' => 'bol', 'BolC8t47420H' => 'bol', 'BolC9t54865H' => 'bol', 'BolC9t56241H' => 'bol', 'BolC9t57375H' => 'bol', 'BraA01t01792Z' => 'bra', 'BraA02t06084Z' => 'bra', 'BraA02t07052Z' => 'bra', 'BraA04t17803Z' => 'bra', 'BraA05t20486Z' => 'bra', 'BraA06t24010Z' => 'bra', 'BraA07t31658Z' => 'bra', 'BraA08t32547Z' => 'bra', 'BraA08t33558Z' => 'bra', 'BraA09t37256Z' => 'bra', 'BraA09t38258Z' => 'bra', 'BraA10t42884Z' => 'bra', 'C01p23380' => 'bna', 'C02p16830' => 'bna', 'C02p33760' => 'bna', 'C03p84260' => 'bna', 'C04p21140' => 'bna', 'C04p58750' => 'bna', 'C05p09690' => 'bna', 'C06p02210' => 'bna', 'C06p49650' => 'bna', 'C08p05860' => 'bna', 'C09p19630' => 'bna', 'C09p34050' => 'bna', 'C09p44980' => 'bna', 'CAN.G1217.10' => 'can', 'CAN.G162.141' => 'can', 'CAN.G311.22' => 'can', 'CAN.G392.4' => 'can', 'CAN.G394.112' => 'can', 'CAN.G424.99' => 'can', 'CANSAT11G1023' => 'cansat', 'CANSAT21G1804' => 'cansat', 'CANSAT25G1947' => 'cansat', 'CANSAT25G3145' => 'cansat', 'CANSAT54G1462' => 'cansat', 'CANSAT56G1395' => 'cansat', 'CARHR011760' => 'chi', 'CARHR037450' => 'chi', 'CARHR049400' => 'chi', 'CARHR069110' => 'chi', 'CARHR122990' => 'chi', 'CARHR229450' => 'chi', 'CARHR234880' => 'chi', 'CARHR253750' => 'chi', 'CARHR267940' => 'chi', 'Carub.0001s1110' => 'cru', 'Carub.0001s3697' => 'cru', 'Carub.0002s0246' => 'cru', 'Carub.0002s2255' => 'cru', 'Carub.0004s1076' => 'cru', 'Carub.0006s3161' => 'cru', 'Carub.0007s1363' => 'cru', 'Carub.0007s1875' => 'cru', 'Carub.0008s1489' => 'cru', 'Ca_01439_v3' => 'car', 'Ca_06371_v3' => 'car', 'Ca_06705_v3' => 'car', 'Ca_13414_v3' => 'car', 'Ca_15214_v3' => 'car', 'Ca_18840_v3' => 'car', 'Ca_25935_v3' => 'car', 'Cc00_g13620' => 'ccan', 'Cc01_g14010' => 'ccan', 'Cc05_g13120' => 'ccan', 'Cc08_g12830' => 'ccan', 'Cc10_g01750' => 'ccan', 'Cc10_g10570' => 'ccan', 'CDE01G0393' => 'cde', 'CDE01G0601' => 'cde', 'CDE05G0973' => 'cde', 'CDE05G2561' => 'cde', 'CDE05G3458' => 'cde', 'CDE08G0223' => 'cde', 'CDE09G0235' => 'cde', 'CDE11G0516' => 'cde', 'CDE11G0750' => 'cde', 'CDE12G0254' => 'cde', 'Cfa011666' => 'cfa', 'Cfa012763' => 'cfa', 'Cfa013941' => 'cfa', 'Cfa015976' => 'cfa', 'Cfa016404' => 'cfa', 'Cfa020232' => 'cfa', 'Cfa020457' => 'cfa', 'Ciclev10001224m.g' => 'ccl', 'Ciclev10001255m.g' => 'ccl', 'Ciclev10003942m.g' => 'ccl', 'Ciclev10008310m.g' => 'ccl', 'Ciclev10009089m.g' => 'ccl', 'Ciclev10021633m.g' => 'ccl', 'Ciclev10024441m.g' => 'ccl', 'Ciclev10028631m.g' => 'ccl', 'CiPaw.05G227000' => 'cil', 'CiPaw.06G026400' => 'cil', 'CiPaw.07G151000' => 'cil', 'CiPaw.08G065800' => 'cil', 'CiPaw.09G079900' => 'cil', 'CiPaw.11G151500' => 'cil', 'CiPaw.11G182400' => 'cil', 'CiPaw.12G107700' => 'cil', 'CiPaw.12G125500' => 'cil', 'CiPaw.12G135800' => 'cil', 'CiPaw.13G080100' => 'cil', 'CiPaw.14G060600' => 'cil', 'ClCG00G003010' => 'cla', 'ClCG01G003900' => 'cla', 'ClCG02G019660' => 'cla', 'ClCG03G009380' => 'cla', 'ClCG03G009440' => 'cla', 'ClCG05G014890' => 'cla', 'ClCG05G018330' => 'cla', 'ClCG10G006310' => 'cla', 'COL.COLO4_09551' => 'col', 'COL.COLO4_09783' => 'col', 'COL.COLO4_19116' => 'col', 'COL.COLO4_26157' => 'col', 'COL.COLO4_27077' => 'col', 'COL.COLO4_37200' => 'col', 'COL.COLO4_38346' => 'col', 'Cpa.g.sc112.46' => 'cpa', 'Cpa.g.sc12.195' => 'cpa', 'Cpa.g.sc26.33' => 'cpa', 'Cpa.g.sc29.135' => 'cpa', 'Cpa.g.sc36.12' => 'cpa', 'Cpa.g.sc97.89' => 'cpa', 'CsaV3_3G005810' => 'csa', 'CsaV3_3G022770' => 'csa', 'CsaV3_3G045800' => 'csa', 'CsaV3_5G004030' => 'csa', 'CsaV3_5G023240' => 'csa', 'CsaV3_6G016340' => 'csa', 'CsaV3_6G049450' => 'csa', 'CSS0000019' => 'camsi', 'CSS0000880' => 'camsi', 'CSS0010564' => 'camsi', 'CSS0011633' => 'camsi', 'CSS0018493' => 'camsi', 'CSS0018546' => 'camsi', 'CSS0030872' => 'camsi', 'CSS0032698' => 'camsi', 'CSS0040105' => 'camsi', 'CSS0045235' => 'camsi', 'CSS0046197' => 'camsi', 'CSS0048275' => 'camsi', 'CSS0048644' => 'camsi', 'DCAR_004930' => 'dca', 'DCAR_005894' => 'dca', 'DCAR_008681' => 'dca', 'DCAR_009927' => 'dca', 'DCAR_010012' => 'dca', 'DCAR_013864' => 'dca', 'DCAR_017382' => 'dca', 'DCAR_020303' => 'dca', 'DCAR_022515' => 'dca', 'Dinv03949' => 'din', 'Dinv07913' => 'din', 'Dinv10310' => 'din', 'Dinv14459' => 'din', 'Dinv17852' => 'din', 'Dinv18947' => 'din', 'Dinv18949' => 'din', 'Dinv21610' => 'din', 'Dinv22318' => 'din', 'Dinv28623' => 'din', 'Dinv31837' => 'din', 'Dinv37256' => 'din', 'Dinv39115' => 'din', 'Dinv39510' => 'din', 'Duzib068G1472' => 'dzi', 'Duzib084G0380' => 'dzi', 'Duzib093G0056' => 'dzi', 'Duzib093G1257' => 'dzi', 'Duzib093G1517' => 'dzi', 'Duzib116G0692' => 'dzi', 'Duzib150G0582' => 'dzi', 'Duzib160G0106' => 'dzi', 'Duzib168G1365' => 'dzi', 'Duzib170G0157' => 'dzi', 'Duzib170G0990' => 'dzi', 'Duzib205G0090' => 'dzi', 'Duzib213G0363' => 'dzi', 'Duzib213G0747' => 'dzi', 'ECA233G5031' => 'eca', 'ECA234G1511' => 'eca', 'ECA238G2362' => 'eca', 'ECA240G0222' => 'eca', 'ECA246G2346' => 'eca', 'ECA247G1924' => 'eca', 'ECA248G3627' => 'eca', 'EL10Ac1g00019' => 'bvu', 'EL10Ac1g02293' => 'bvu', 'EL10Ac4g07993' => 'bvu', 'EL10Ac5g13021' => 'bvu', 'EL10Ac7g16136' => 'bvu', 'EL10Ac7g16140' => 'bvu', 'EL10As6g23696' => 'bvu', 'Eucgr.D00857' => 'egr', 'Eucgr.D02034' => 'egr', 'Eucgr.E00450' => 'egr', 'Eucgr.F00049' => 'egr', 'Eucgr.F01643' => 'egr', 'Eucgr.F03418' => 'egr', 'Eucgr.F03752' => 'egr', 'Eucgr.J01931' => 'egr', 'FAN02G2741' => 'fan', 'FAN04G0707' => 'fan', 'FAN08G1029' => 'fan', 'FAN09G0957' => 'fan', 'FAN11G0313' => 'fan', 'FAN11G2133' => 'fan', 'FAN11G3372' => 'fan', 'FAN13G2351' => 'fan', 'FAN14G4347' => 'fan', 'FAN15G0177' => 'fan', 'FAN15G3193' => 'fan', 'FAN16G1894' => 'fan', 'FAN16G2284' => 'fan', 'FAN16G2939' => 'fan', 'FAN18G3240' => 'fan', 'FAN20G1361' => 'fan', 'FAN21G1685' => 'fan', 'FAN21G2737' => 'fan', 'FAN24G1249' => 'fan', 'FAN25G0897' => 'fan', 'FAN25G1496' => 'fan', 'FAN25G1561' => 'fan', 'FAN25G2653' => 'fan', 'FAN25G3272' => 'fan', 'FAN27G0810' => 'fan', 'FAN27G2275' => 'fan', 'FvH4_2g26340' => 'fve', 'FvH4_2g38560' => 'fve', 'FvH4_3g21630' => 'fve', 'FvH4_3g38290' => 'fve', 'FvH4_5g00180' => 'fve', 'FvH4_6g15390' => 'fve', 'Glyma.01G210700' => 'gma', 'Glyma.04G252600' => 'gma', 'Glyma.05G056600' => 'gma', 'Glyma.05G140100' => 'gma', 'Glyma.06G109900' => 'gma', 'Glyma.06G265800' => 'gma', 'Glyma.09G057200' => 'gma', 'Glyma.11G031300' => 'gma', 'Glyma.12G136900' => 'gma', 'Glyma.12G215700' => 'gma', 'Glyma.13G250800' => 'gma', 'Glyma.13G285800' => 'gma', 'Glyma.14G016100' => 'gma', 'Glyma.14G218700' => 'gma', 'Glyma.15G063600' => 'gma', 'Glyma.17G139000' => 'gma', 'Glyma.17G257700' => 'gma', 'Glyma.18G066100' => 'gma', 'Gohir.A01G073400' => 'ghi', 'Gohir.A01G111400' => 'ghi', 'Gohir.A03G009400' => 'ghi', 'Gohir.A05G089400' => 'ghi', 'Gohir.A05G167333' => 'ghi', 'Gohir.A05G167400' => 'ghi', 'Gohir.A05G186800' => 'ghi', 'Gohir.A05G232500' => 'ghi', 'Gohir.A06G041800' => 'ghi', 'Gohir.A07G103200' => 'ghi', 'Gohir.A11G026400' => 'ghi', 'Gohir.A11G324733' => 'ghi', 'Gohir.A11G325000' => 'ghi', 'Gohir.A12G219200' => 'ghi', 'Gohir.A13G134500' => 'ghi', 'Gohir.D01G060000' => 'ghi', 'Gohir.D01G098000' => 'ghi', 'Gohir.D03G161500' => 'ghi', 'Gohir.D05G090300' => 'ghi', 'Gohir.D05G170400' => 'ghi', 'Gohir.D05G189700' => 'ghi', 'Gohir.D05G234900' => 'ghi', 'Gohir.D06G042800' => 'ghi', 'Gohir.D07G107100' => 'ghi', 'Gohir.D11G025700' => 'ghi', 'Gohir.D11G344000' => 'ghi', 'Gohir.D12G221500' => 'ghi', 'Gohir.D13G138900' => 'ghi', 'Gorai.001G115200' => 'gra', 'Gorai.002G081400' => 'gra', 'Gorai.002G123600' => 'gra', 'Gorai.003G170100' => 'gra', 'Gorai.007G027900' => 'gra', 'Gorai.007G374400' => 'gra', 'Gorai.008G237300' => 'gra', 'Gorai.009G092800' => 'gra', 'Gorai.009G175600' => 'gra', 'Gorai.009G195000' => 'gra', 'Gorai.009G243200' => 'gra', 'Gorai.010G048000' => 'gra', 'Gorai.013G155400' => 'gra', 'GSVIVG01001287001' => 'vvi', 'GSVIVG01004470001' => 'vvi', 'GSVIVG01008819001' => 'vvi', 'GSVIVG01008925001' => 'vvi', 'GSVIVG01009892001' => 'vvi', 'GSVIVG01014576001' => 'vvi', 'GSVIVG01024778001' => 'vvi', 'HanXRQChr03g0076251' => 'han', 'HanXRQChr03g0077031' => 'han', 'HanXRQChr05g0159281' => 'han', 'HanXRQChr06g0164241' => 'han', 'HanXRQChr06g0184731' => 'han', 'HanXRQChr08g0213941' => 'han', 'HanXRQChr08g0229741' => 'han', 'HanXRQChr12g0367251' => 'han', 'HanXRQChr13g0386631' => 'han', 'HanXRQChr13g0407591' => 'han', 'HanXRQChr14g0430101' => 'han', 'HanXRQChr16g0516511' => 'han', 'HanXRQChr17g0550741' => 'han', 'Haze_00498' => 'cav', 'Haze_06681' => 'cav', 'Haze_07868' => 'cav', 'Haze_09587' => 'cav', 'Haze_09785' => 'cav', 'Haze_22625' => 'cav', 'Haze_24269' => 'cav', 'Hma1.2p1_0009F.1_g006120' => 'hma', 'Hma1.2p1_0023F.1_g015430' => 'hma', 'Hma1.2p1_0036F.1_g022750' => 'hma', 'Hma1.2p1_0227F.1_g096370' => 'hma', 'Hma1.2p1_0638F.1_g193810' => 'hma', 'Hma1.2p1_1054F.1_g252510' => 'hma', 'Hma1.2p1_1054F.1_g252520' => 'hma', 'Hma1.2p1_3035F.1_g331933' => 'hma', 'Hma1.2p1_3035F.1_g331936' => 'hma', 'HPP92_000014' => 'vpl', 'HPP92_000072' => 'vpl', 'HPP92_001564' => 'vpl', 'HPP92_004402' => 'vpl', 'HPP92_007418' => 'vpl', 'HPP92_012334' => 'vpl', 'HPP92_012378' => 'vpl', 'HPP92_014099' => 'vpl', 'HPP92_015029' => 'vpl', 'HPP92_027809' => 'vpl', 'Hund02147' => 'sun', 'Hund05205' => 'sun', 'Hund16830' => 'sun', 'Hund21312' => 'sun', 'Hund23323' => 'sun', 'Hund27044' => 'sun', 'Lalb_Chr04g0247991' => 'lal', 'Lalb_Chr07g0187711' => 'lal', 'Lalb_Chr08g0241601' => 'lal', 'Lalb_Chr09g0324441' => 'lal', 'Lalb_Chr10g0107311' => 'lal', 'Lalb_Chr12g0206811' => 'lal', 'Lalb_Chr12g0206821' => 'lal', 'Lalb_Chr13g0293731' => 'lal', 'Lalb_Chr14g0369831' => 'lal', 'Lalb_Chr15g0082771' => 'lal', 'Lalb_Chr16g0379681' => 'lal', 'Lalb_Chr17g0343951' => 'lal', 'Lalb_Chr18g0050821' => 'lal', 'Lalb_Chr19g0134681' => 'lal', 'Lalb_Chr20g0122621' => 'lal', 'Lalb_Chr22g0357151' => 'lal', 'Lalb_Chr23g0270841' => 'lal', 'Lalb_Chr23g0270851' => 'lal', 'Lalb_Chr23g0270861' => 'lal', 'Lj1A1221T59' => 'lonja', 'Lj1A141T55' => 'lonja', 'Lj1A862T74' => 'lonja', 'Lj1A884G87' => 'lonja', 'Lj1g0011046' => 'lja', 'Lj2A1079T34' => 'lonja', 'Lj2A275T38' => 'lonja', 'Lj2g0000710' => 'lja', 'Lj2P213T12' => 'lonja', 'Lj3g0006158' => 'lja', 'Lj3g0021031' => 'lja', 'Lj4A25T55' => 'lonja', 'Lj4A595G19' => 'lonja', 'Lj4g0005809' => 'lja', 'Lj4g0013015' => 'lja', 'Lj5g0022041' => 'lja', 'Lj6g0006188' => 'lja', 'Lj6g0011235' => 'lja', 'Lj8C165T6' => 'lonja', 'LjContig00272g0006186' => 'lja', 'LjContig00272g0012806' => 'lja', 'Lsat_1_v5_gn_0_15181' => 'lsa', 'Lsat_1_v5_gn_2_10861' => 'lsa', 'Lsat_1_v5_gn_3_1800' => 'lsa', 'Lsat_1_v5_gn_4_57900' => 'lsa', 'Lsat_1_v5_gn_5_171660' => 'lsa', 'Lsat_1_v5_gn_5_4521' => 'lsa', 'Lsat_1_v5_gn_8_30540' => 'lsa', 'Lsat_1_v5_gn_9_20121' => 'lsa', 'Lsat_1_v5_gn_9_91601' => 'lsa', 'Lsat_1_v5_gn_9_95041' => 'lsa', 'Manes.01G163500' => 'mes', 'Manes.02G036850' => 'mes', 'Manes.02G121000' => 'mes', 'Manes.02G160100' => 'mes', 'Manes.02G215060' => 'mes', 'Manes.02G215660' => 'mes', 'Manes.03G121500' => 'mes', 'Manes.03G137700' => 'mes', 'Manes.03G137802' => 'mes', 'Manes.05G148300' => 'mes', 'Manes.15G063550' => 'mes', 'Manes.15G077900' => 'mes', 'Manes.16G016500' => 'mes', 'Manes.18G014301' => 'mes', 'Manes.18G074000' => 'mes', 'Mapoly0034s0076' => 'mpo', 'Mapoly0089s0067' => 'mpo', 'MBI04_g40950_MAGBIO' => 'mbi', 'MBI05_g45684_MAGBIO' => 'mbi', 'MBI09_g12174_MAGBIO' => 'mbi', 'MBI09_g43874_MAGBIO' => 'mbi', 'MBI13_g34302_MAGBIO' => 'mbi', 'MBI16_g18323_MAGBIO' => 'mbi', 'MBI16_g46146_MAGBIO' => 'mbi', 'MBI19_g33776_MAGBIO' => 'mbi', 'MBI19_g40238_MAGBIO' => 'mbi', 'MD03G1073300' => 'mdo', 'MD03G1214000' => 'mdo', 'MD04G1085800' => 'mdo', 'MD04G1104100' => 'mdo', 'MD06G1062500' => 'mdo', 'MD08G1013600' => 'mdo', 'MD08G1169800' => 'mdo', 'MD11G1079200' => 'mdo', 'MD11G1229000' => 'mdo', 'MD15G1013200' => 'mdo', 'MD15G1356300' => 'mdo', 'Medtr1g024980' => 'mtr', 'Medtr2g010860' => 'mtr', 'Medtr2g010870' => 'mtr', 'Medtr3g072920' => 'mtr', 'Medtr3g463270' => 'mtr', 'Medtr4g081420' => 'mtr', 'Medtr4g101450' => 'mtr', 'Medtr5g012220' => 'mtr', 'Medtr5g094440' => 'mtr', 'MELO3C003044.2' => 'cme', 'MELO3C003757.2' => 'cme', 'MELO3C005555.2' => 'cme', 'MELO3C007349.2' => 'cme', 'MELO3C016581.2' => 'cme', 'MELO3C018138.2' => 'cme', 'MELO3C025864.2' => 'cme', 'Migut.A00814' => 'egut', 'Migut.C00823' => 'egut', 'Migut.C01171' => 'egut', 'Migut.E00854' => 'egut', 'Migut.E01672' => 'egut', 'Migut.H01868' => 'egut', 'Migut.K00584' => 'egut', 'Migut.M01260' => 'egut', 'Migut.M01678' => 'egut', 'Migut.M01820' => 'egut', 'Migut.N03155' => 'egut', 'Migut.O00763' => 'egut', 'MSTRG.12949' => 'ama', 'MSTRG.14407' => 'ama', 'MSTRG.15172' => 'ama', 'MSTRG.15954' => 'ama', 'MSTRG.1940' => 'ama', 'MSTRG.24248' => 'ama', 'MSTRG.25243' => 'ama', 'MSTRG.25401' => 'ama', 'MSTRG.25534' => 'ama', 'MSTRG.26405' => 'ama', 'MSTRG.6042' => 'ama', 'Nitab4.5_0000010g0170' => 'nta', 'Nitab4.5_0000193g0090' => 'nta', 'Nitab4.5_0000312g0360' => 'nta', 'Nitab4.5_0000337g0160' => 'nta', 'Nitab4.5_0000494g0030' => 'nta', 'Nitab4.5_0000552g0030' => 'nta', 'Nitab4.5_0001540g0010' => 'nta', 'Nitab4.5_0002345g0110' => 'nta', 'Nitab4.5_0004144g0030' => 'nta', 'Nitab4.5_0004638g0010' => 'nta', 'Nitab4.5_0006304g0010' => 'nta', 'Nitab4.5_0006475g0020' => 'nta', 'Nitab4.5_0007716g0030' => 'nta', 'Nitab4.5_0010169g0040' => 'nta', 'Nn1g00040' => 'nnu', 'Nn1g01070' => 'nnu', 'Nn1g02443' => 'nnu', 'Nn1g03734' => 'nnu', 'Nn1g05880' => 'nnu', 'Nn1g06937' => 'nnu', 'Nn1g08673' => 'nnu', 'Nn2g11414' => 'nnu', 'Nn2g13647' => 'nnu', 'Nn4g24375' => 'nnu', 'Nn5g28121' => 'nnu', 'Nn5g30164' => 'nnu', 'Nn6g33571' => 'nnu', 'Nn6g34023' => 'nnu', 'Nn8g38700' => 'nnu', 'Oeu006291.1' => 'oeu', 'Oeu007331.1' => 'oeu', 'Oeu007647.1' => 'oeu', 'Oeu011657.1' => 'oeu', 'Oeu016147.1' => 'oeu', 'Oeu019915.1' => 'oeu', 'Oeu020871.1' => 'oeu', 'Oeu030037.1' => 'oeu', 'Oeu040222.1' => 'oeu', 'Oeu040223.1' => 'oeu', 'Oeu041079.1' => 'oeu', 'Oeu050807.1' => 'oeu', 'Oeu050808.1' => 'oeu', 'Oeu054211.1' => 'oeu', 'Oeu054212.1' => 'oeu', 'Oeu054471.1' => 'oeu', 'Oeu054698.1' => 'oeu', 'Os01g0785900' => 'osa', 'Os02g0661600' => 'osa', 'Os03g0264600' => 'osa', 'Os04g0115500' => 'osa', 'Os04g0690100' => 'osa', 'Os06g0683000' => 'osa', 'Os10g0554001' => 'osa', 'Os11g0169400' => 'osa', 'Peaxi162Scf00002g00097' => 'pax', 'Peaxi162Scf00082g00107' => 'pax', 'Peaxi162Scf00154g00124' => 'pax', 'Peaxi162Scf00438g00617' => 'pax', 'Peaxi162Scf00540g00616' => 'pax', 'Peaxi162Scf01086g00028' => 'pax', 'PGR004G0638' => 'pgr', 'PGR031G1867' => 'pgr', 'PGR031G2281' => 'pgr', 'PGR042G2839' => 'pgr', 'PGR042G3043' => 'pgr', 'PGR044G1937' => 'pgr', 'PGR083G2714' => 'pgr', 'PGR083G2861' => 'pgr', 'PGR119G2071' => 'pgr', 'PGR142G2294' => 'pgr', 'PGSC0003DMG400004794' => 'stu', 'PGSC0003DMG400009859' => 'stu', 'PGSC0003DMG400019231' => 'stu', 'PGSC0003DMG400020021' => 'stu', 'PGSC0003DMG400021725' => 'stu', 'PGSC0003DMG400029024' => 'stu', 'PGSC0003DMG400029814' => 'stu', 'PGSC0003DMG401030350' => 'stu', 'Phvul.001G007100' => 'pvu', 'Phvul.002G061700' => 'pvu', 'Phvul.002G183450' => 'pvu', 'Phvul.006G064800' => 'pvu', 'Phvul.006G196000' => 'pvu', 'Phvul.008G275400' => 'pvu', 'Phvul.009G121700' => 'pvu', 'Phvul.011G142000' => 'pvu', 'Potri.001G121600' => 'ptr', 'Potri.001G249900' => 'ptr', 'Potri.001G415600' => 'ptr', 'Potri.002G023200' => 'ptr', 'Potri.002G087500' => 'ptr', 'Potri.003G111800' => 'ptr', 'Potri.004G030800' => 'ptr', 'Potri.005G173400' => 'ptr', 'Potri.005G238300' => 'ptr', 'Potri.009G043900' => 'ptr', 'Potri.011G131300' => 'ptr', 'Pp3c23_13220' => 'ppa', 'Pp3c24_2500' => 'ppa', 'Prupe.1G366300' => 'ppe', 'Prupe.1G503600' => 'ppe', 'Prupe.4G200600' => 'ppe', 'Prupe.4G232700' => 'ppe', 'Prupe.4G232900' => 'ppe', 'Prupe.5G073900' => 'ppe', 'Prupe.6G060000' => 'ppe', 'Prupe.6G241000' => 'ppe', 'Psat0ss8367g0280' => 'psa', 'Psat1g210920' => 'psa', 'Psat2g009280' => 'psa', 'Psat4g070920' => 'psa', 'Psat5g133800' => 'psa', 'Psat5g161200' => 'psa', 'Psat6g003200' => 'psa', 'Psat7g161080' => 'psa', 'PSO017G0304' => 'pso', 'PSO170G3252' => 'pso', 'PSO170G5371' => 'pso', 'PSO210G0474' => 'pso', 'PSO210G2320' => 'pso', 'PSO210G6505' => 'pso', 'PSO302G0204' => 'pso', 'PSO339G0298' => 'pso', 'PSO384G1170' => 'pso', 'PSO528G0105' => 'pso', 'PSO541G0386' => 'pso', 'PSO541G1013' => 'pso', 'PSO541G5378' => 'pso', 'PSO675G3875' => 'pso', 'PSO675G8123' => 'pso', 'PSO675G9256' => 'pso', 'PSO832G1659' => 'pso', 'QL01p037472' => 'qlo', 'QL02p011452' => 'qlo', 'QL03p054295' => 'qlo', 'QL05p077205' => 'qlo', 'QL07p045235' => 'qlo', 'QL08p005527' => 'qlo', 'QL08p014022' => 'qlo', 'QL09p036028' => 'qlo', 'QL12p013071' => 'qlo', 'QL93p0073_1321' => 'qlo', 'RcHm_v2.0_Chr3g0468871' => 'rch', 'RcHm_v2.0_Chr5g0037081' => 'rch', 'RcHm_v2.0_Chr5g0042611' => 'rch', 'RcHm_v2.0_Chr5g0068821' => 'rch', 'RcHm_v2.0_Chr6g0294921' => 'rch', 'RcHm_v2.0_Chr6g0302741' => 'rch', 'RcHm_v2.0_Chr7g0202691' => 'rch', 'Rhsim04G0014900' => 'rsi', 'Rhsim06G0107200' => 'rsi', 'Rhsim06G0187900' => 'rsi', 'Rhsim07G0105700' => 'rsi', 'Rhsim07G0246700' => 'rsi', 'Rhsim13G0071500' => 'rsi', 'Rhsim13G0162500' => 'rsi', 'Sabra01G0093700' => 'sbr', 'Sabra02G0018900' => 'sbr', 'Sabra02G0069000' => 'sbr', 'Sabra03G0077500' => 'sbr', 'Sabra04G0017500' => 'sbr', 'Sabra05G0130900' => 'sbr', 'Sabra05G0184100' => 'sbr', 'Sabra09G0031400' => 'sbr', 'Sabra11G0118400' => 'sbr', 'Sabra16G0151900' => 'sbr', 'Sabra16G0282200' => 'sbr', 'SalBow6G4745' => 'sbo', 'SalBow6G6856' => 'sbo', 'SalBow7G0265' => 'sbo', 'SalBow7G0485' => 'sbo', 'SalBow7G0916' => 'sbo', 'SalBow7G2259' => 'sbo', 'SalBow8G1785' => 'sbo', 'SalBow8G4532' => 'sbo', 'SalBow8G5076' => 'sbo', 'Sc01g0001430' => 'sci', 'Sc01g0009380' => 'sci', 'Sc02g0000720' => 'sci', 'Sc02g0008520' => 'sci', 'Sc03g0009190' => 'sci', 'Sc12g0000920' => 'sci', 'Sed0000586' => 'sed', 'Sed0001219' => 'sed', 'Sed0007436' => 'sed', 'Sed0011213' => 'sed', 'Sed0014087' => 'sed', 'Sed0014479' => 'sed', 'Sed0017155' => 'sed', 'Sed0020123' => 'sed', 'Sed0022784' => 'sed', 'Sed0026727' => 'sed', 'SEGI_19879' => 'sgi', 'SEGI_22827' => 'sgi', 'SEGI_28925' => 'sgi', 'SEGI_30591' => 'sgi', 'SEGI_41402' => 'sgi', 'SGA_v2.0_scaffold114G32012' => 'sas', 'SGA_v2.0_scaffold120G32857' => 'sas', 'SGA_v2.0_scaffold146G36164' => 'sas', 'SGA_v2.0_scaffold52G19003' => 'sas', 'SGA_v2.0_scaffold70G23538' => 'sas', 'SGA_v2.0_scaffold92G28243' => 'sas', 'SGA_v2.0_scaffold9G05016' => 'sas', 'SMO143G0017' => 'smo', 'SMO228G0114' => 'smo', 'SMO335G0014' => 'smo', 'Solyc02g079920.3' => 'sly', 'Solyc04g081370.2' => 'sly', 'Solyc06g076820.1' => 'sly', 'Solyc07g063970.3' => 'sly', 'Solyc08g079010.1' => 'sly', 'Solyc11g013220.2' => 'sly', 'Solyc12g014615.1' => 'sly', 'Sopen02g024670' => 'spe', 'Sopen04g034990' => 'spe', 'Sopen06g033200' => 'spe', 'Sopen07g032110' => 'spe', 'Sopen08g027470' => 'spe', 'Sopen11g008250' => 'spe', 'Sopen12g007520' => 'spe', 'Sp1g10120' => 'spa', 'Sp1g34830' => 'spa', 'Sp2g02070' => 'spa', 'Sp4g12380' => 'spa', 'Sp5g30820' => 'spa', 'Sp6g05100' => 'spa', 'Sp6g16590' => 'spa', 'Sp7g20600' => 'spa', 'Sp7g25160' => 'spa', 'TAR151G0001' => 'tar', 'TAR365G0983' => 'tar', 'TAR365G1133' => 'tar', 'TAR369G0995' => 'tar', 'TAR375G1039' => 'tar', 'TAR623G0630' => 'tar', 'TAR623G1278' => 'tar', 'TAR625G1045' => 'tar', 'TAR626G0739' => 'tar', 'TAR627G1035' => 'tar', 'TAR629G0326' => 'tar', 'TAR629G3024' => 'tar', 'TAR633G0889' => 'tar', 'THA.LOC104799891' => 'tha', 'THA.LOC104799892' => 'tha', 'THA.LOC104800723' => 'tha', 'THA.LOC104809174' => 'tha', 'THA.LOC104809457' => 'tha', 'THA.LOC104809462' => 'tha', 'THA.LOC104813695' => 'tha', 'THA.LOC104813789' => 'tha', 'THA.LOC104817077' => 'tha', 'THA.LOC104818915' => 'tha', 'Thecc.03G255700' => 'tca', 'Thecc.05G054400' => 'tca', 'Thecc.06G207900' => 'tca', 'Thecc.07G022700' => 'tca', 'Thecc.07G055900' => 'tca', 'Thecc.08G043400' => 'tca', 'Thecc.08G119600' => 'tca', 'Thecc.09G304600' => 'tca', 'Thhalv10007989m.g' => 'esa', 'Thhalv10011499m.g' => 'esa', 'Thhalv10013387m.g' => 'esa', 'Thhalv10016804m.g' => 'esa', 'Thhalv10018514m.g' => 'esa', 'Thhalv10024037m.g' => 'esa', 'Thhalv10025260m.g' => 'esa', 'Thhalv10026027m.g' => 'esa', 'Thhalv10029522m.g' => 'esa', 'TPR.G13290' => 'tpr', 'TPR.G22344' => 'tpr', 'TPR.G25890' => 'tpr', 'TPR.G26396' => 'tpr', 'TPR.G31718' => 'tpr', 'TPR.G32623' => 'tpr', 'TPR.G34065' => 'tpr', 'TPR.G3475' => 'tpr', 'TPR.G35266' => 'tpr', 'TPR.G37582' => 'tpr', 'TPR.G5100' => 'tpr', 'TPR.G5106' => 'tpr', 'TWI12G0493' => 'twi', 'TWI31G1330' => 'twi', 'TWI38G0631' => 'twi', 'TWI38G0760' => 'twi', 'TWI39G0205' => 'twi', 'TWI53G2141' => 'twi', 'TWI56G0790' => 'twi', 'TWI56G1251' => 'twi', 'TWI60G0499' => 'twi', 'TWI79G0920' => 'twi', 'TWI81G0348' => 'twi', 'unitig_0.g1235' => 'ugi', 'unitig_22.g5315' => 'ugi', 'unitig_37.g12138' => 'ugi', 'unitig_61.g26356' => 'ugi', 'unitig_744.g24604' => 'ugi', 'unitig_747.g21487' => 'ugi', 'unitig_92.g28121' => 'ugi', 'vmacro02983' => 'vma', 'vmacro03738' => 'vma', 'vmacro04347' => 'vma', 'vmacro09670' => 'vma', 'vmacro11777' => 'vma', 'vmacro12544' => 'vma', 'VMungo0251G2368' => 'vmu', 'VMungo0331G1458' => 'vmu', 'VMungo0540G1003' => 'vmu', 'VMungo0540G1945' => 'vmu', 'VMungo0647G0262' => 'vmu', 'VMungo0647G2235' => 'vmu', 'VMungo1127G1280' => 'vmu', 'VMungo1215G0181' => 'vmu', 'VMungo1309G0857' => 'vmu', 'Zm00001eb011680' => 'zma', 'Zm00001eb023130' => 'zma', 'Zm00001eb089250' => 'zma', 'Zm00001eb091800' => 'zma', 'Zm00001eb151240' => 'zma', 'Zm00001eb200840' => 'zma', 'Zm00001eb225340' => 'zma', 'Zm00001eb249710' => 'zma', 'Zm00001eb369730' => 'zma', 'Zm00001eb391550' => 'zma', 'Zm00001eb418410' => 'zma', 'Zm00001eb434360' => 'zma' ) $gf_id = 'HOM05D000594' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000594' ) $data_identifier = 'HOM05D000594' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 10, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 12, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 14, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 19, 'lonja' => (int) 10, 'lja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 12, 'ama' => (int) 11, 'nta' => (int) 14, 'nnu' => (int) 15, 'oeu' => (int) 17, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434360' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1